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xcore example molecular signatures

remap_mini.Rd

Molecular signatures data intended for use in xcore vignette and examples. It is build ReMap2020 molecular signatures constructed against FANTOM5 annotation, which can be found in xcoredata package. Here the data is only a subset limited to core promoters (promoters_f5_core) and randomly selected 600 signatures.

Usage

data(remap_mini)

Format

A dgCMatrix with 14191 rows and 600 columns holding interaction matrix for subset of ReMap2020 molecular signatures against FANTOM5 annotation. Rows corresponds to FANTOM5 promoters and columns to signatures.